The built in filter is at Most 3 stop, so it would completely eliminate the need for buying a 1, 2 or 3 stop. it is a great add-on feature I wish they offered in all of their cameras.
Not sure what a Slim Pro II is or who makes it (B&W, Hoya, etc..) , but don't concern yourself if that is better than the built-in one or not, it would be a complete waste to buy if covering the same stop range as the built-in one.
However if you really want to alter the time 3 stops does not do that and therefore it does make sense to buy an aftermarket 5, 6 or 10 stop filter.
Personally if I had a built-in 3 stop option, I would add a 6 stop to my bag and then you can cover 3, 6, 9 as needed with just 1 extra filter.
A polarizer is completely different and it has it's uses, mainly reducing reflections.
Useful for water but really anything reflective and does add pop to Blue skies and other colors as well (though oddly usually more harmful then good at sunrise/sunset). Something good to have in the bag but you might only be using it 10% of the time so not something you need.
A polarizer will typically have the same effect as a 1 or 2 stop ND filter since it does darker the frame a bit.
Also, only at certain angles from the sun does it actually work so if the angle is not right you could be doing more harm than good by darkening your scene and lowering your shutter speed with no added benefit.
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