The lens back element is moved forward to give space for the TC 1.4 & 2.0, I believe this would result a less image quality loss when TC is attached.
But how about that longer flange distance compares to the other Z lenses?
Would the 70-200 S result a better image quality if it doesn't care about the TCs?
I saw a lot of people buying the lens + TC combo, maybe I'll just do the same
I think you mean back focus distance (the distance between the rearmost lens element and the sensor) rather than flange distance. The back focus distance on a telephoto lens is usually longer than the flange distance, even on the F mount. If you look into an F mount telephoto lens from the back side, you will see the rear element is recessed into the body in most designs. Since the Z mount flange is much closer to the sensor, there is even more room between the flange and the rear element. So the accommodation of a teleconverter likely has no impact on the design of the lens.
Wide angle lenses are where the rear element gets close to the sensor, and having a small minimum back focus distance allows greater flexibility in the optical design. It has been said that the advantages of the mirrorless mount for lens design are primarily in wide angle and very large aperture designs, and not so much for telephoto.