OK, so yesterday I spoke to Nikon Service. They advised me to reset the camera using the two green buttons (+/- and + with the magnifying glass). The results in artificial light looked pretty much the same, although I was using pieces of paper with A's of various fonts taped to the batteries instead of the batteries themselves as subjects.
Then this morning something interesting happened. It is sunny outside, where I think it was probably cloudy during previous "natural light" tests. Now it appears that -10 AF seems to be acceptable for both the 35 and 50 mm lens in both artificial and natural sunlight (indirect through low-E glass).
Cropped images:

35mm f/1.8 artificial AF=-10

35mm f/1.8 AF=10
The ideal was probably a little more than -10 for artificial light and a little less for natural light, but this seems to be a good enough compromise.
First, I would like to extend my thanks to you, for taking the time to document your testing. Please excuse and ignore those who are unable to comprehend its implications.
The issue you are studying is well known, and is principally due to design deficiencies of the AF module, which employs single-element molded-plastic lenses. CA for these lenses is rather high, causing focus shifts with color. The effect on AF accuracy is predictable and consistent.
On the other hand, how the camera may or may not compensate for the AF module's color shift is not as well understood, especially given the plethora of camera models in the field. Since recent Nikon models are equipped with color-sensitive metering, there is considerable latitude for a designer to add color compensation for the AF.
Given that, you might like to look for the effect of WB settings on AF. For example, you could try biasing auto WB with a blue/amber shift, or try the incandescent and daylight settings instead of using auto, or even try a range of manual color temperature settings, to see what the effect on AF accuracy might be.
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Source credit: Prov 2:6
- Marianne