In infrared photography one often has to deal with internal reflections and hotspots, often due to strong IR reflection from the surface of digital sensors (compared to film in analog cameras).Good point, but what is described there matters for IR photography (image quality, ghosting, flare), not for IR the described IR assisted focusing.Coating matters:
http://dpanswers.com/content/irphoto_lenses.php
If there really was an IR-blocking coating on the lenses, they could not be used for infrared photography at all. Reality is that all lenses can be used, but many of them have compromised image quality due to internal reflections and other issues. In general, recent lenses are worse for infrared photography compared to old lenses with simple coatings, due to the recent multicoatings being optimised for visible light. But the new coatings certainly don't block the infrared.